I am using pybel module in my python script to just display all the atom types. Below is simple script:
for mol in pybel.readfile('sdf',lig):
for atom in mol :
print (atom.atomicnum, atom.type, atom.coords,atom.idx,atom.vector)
When I look at the output all the Hydrogens attached to N is also written as HC instead of HN. Am I missing something here? Please let me know If there is something wrong here.