Pybel - atomtype HN not depicted

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Pybel - atomtype HN not depicted

Jain, Yatish



I am using pybel module in my python script to just display all the atom types. Below is simple script:


import pybel




for mol in pybel.readfile('sdf',lig):

     for atom in mol :

           print (atom.atomicnum, atom.type, atom.coords,atom.idx,atom.vector)



When I look at the output all the Hydrogens attached to N is also written as HC instead of HN. Am I missing something here? Please let me know If there is something wrong here.




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