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Pybel - atomtype HN not depicted

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Pybel - atomtype HN not depicted

Jain, Yatish

Hi,

 

I am using pybel module in my python script to just display all the atom types. Below is simple script:

 

import pybel

 

 

lig="SETD7_4J83_A.sdf"

for mol in pybel.readfile('sdf',lig):

     for atom in mol :

           print (atom.atomicnum, atom.type, atom.coords,atom.idx,atom.vector)

 

 

When I look at the output all the Hydrogens attached to N is also written as HC instead of HN. Am I missing something here? Please let me know If there is something wrong here.

 

Thanks,

Yatish


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