Residue name assignment

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Residue name assignment


I am minimising a few protein-ligand complexes with smina. In the pdbqt files produced by smina the residue name information for the binding site residues is lost. If I try to convert the file to other formats with OpenBabel, it does not recognise/reassign the residue names. I was wondering if there is a way to tell OB that the system contains polypeptides.

Best regards,