Reply – Re: problem with sdf->pdb conversion
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Re: problem with sdf->pdb conversion
— by rathjyoti rathjyoti
Dear friends,

I have converted ZINC database SDF file to pdb with openbabel. Then I docked the molecule and checked the interaction with LigPlot, I found the bond order of oxygen were wrong. (Not like those of original ZINC molecule.) Similarly, when I visualize it with Marvin-sketch the bond order of oxygen were not correct. Please find the required file attached.LigPlot.pngZINC12958901.sdfZINC12958901.pdb

Regards
Jyoti