unable to run babel command after installation centOS 6

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unable to run babel command after installation centOS 6

Vaibhav Dixit
Dear All,
I have followed the procedure for installation given below.
In short I could not find major errors during the process expect for the fact that:
1) It could not find LibXml2, wxWidgets
2) -- Performing Test SCANDIR_NEEDS_CONST - Failed
3) -- Looking for conio.h - not found
4) -- Looking for rint - not found
5) -- Looking for sranddev - not found
6) Syntax Warning in cmake code at (in two places)

Thus I am not sure if installation was a success or not?
May be not because I am unable to use the babel command.
Can you please suggest me what must have gone wrong and how to fix it?
Sorry for pasting such long output.
Thanks a lot.
Vaibhav
$ tar zxf openbabel-2.3.2.tar.gz   # (this creates openbabel-2.3.2)
$ mkdir build
cd build $ cmake ../openbabel-2.3.2
$ make
$ make install
The out put of these commands is given below
[root@localhost build]# cmake ../openbabel-2.3.2
-- The C compiler identification is GNU 4.4.7
-- The CXX compiler identification is GNU 4.4.7
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Using included inchi library.
-- Could NOT find LibXml2 (missing:  LIBXML2_LIBRARIES LIBXML2_INCLUDE_DIR) 
CMake Warning at CMakeLists.txt:152 (message):
  libxml2 not found - disabling CML support!


-- Found ZLIB: /usr/lib64/libz.so (found version "1.2.3") 
-- Could NOT find wxWidgets (missing:  wxWidgets_FOUND) 
-- Looking for conio.h
-- Looking for conio.h - not found
-- Looking for sys/time.h
-- Looking for sys/time.h - found
-- Looking for time.h
-- Looking for time.h - found
-- Looking for strings.h
-- Looking for strings.h - found
-- Looking for rpc/xdr.h
-- Looking for rpc/xdr.h - found
-- Looking for regex.h
-- Looking for regex.h - found
-- Looking for C++ include sstream
-- Looking for C++ include sstream - found
-- Looking for rint
-- Looking for rint - not found
-- Looking for snprintf
-- Looking for snprintf - found
-- Looking for sranddev
-- Looking for sranddev - not found
-- Looking for strcasecmp
-- Looking for strcasecmp - found
-- Looking for strncasecmp
-- Looking for strncasecmp - found
-- Looking for dlopen in dl
-- Looking for dlopen in dl - found
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of clock_t
-- Check size of clock_t - done
-- Performing Test SCANDIR_NEEDS_CONST
-- Performing Test SCANDIR_NEEDS_CONST - Failed
-- Performing Test HAVE_GCC_VISIBILITY
-- Performing Test HAVE_GCC_VISIBILITY - Success
-- Could NOT find Eigen3 (missing:  EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0")
-- Could NOT find Eigen2 (missing:  EIGEN2_INCLUDE_DIR EIGEN2_VERSION_OK) (Required is at least version "2.0.0")
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.23") 
-- checking for module 'cairo'
--   found cairo, version 1.8.8
-- Found Cairo: /usr/lib64/libcairo.so  
-- Cairo found. PNG output will be supported.
-- Looking for getopt
-- Looking for getopt - found
-- Attempting to build the GUI
--    wxWidgets not found => GUI will not be built
CMake Warning (dev) at test/CMakeLists.txt:171 (include):
  Syntax Warning in cmake code at

    /home/vaibhav/Downloads/openbabel-2.3.2/cmake/modules/UsePythonTest.cmake:54:14

  Argument not separated from preceding token by whitespace.
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at test/CMakeLists.txt:171 (include):
  Syntax Warning in cmake code at

    /home/vaibhav/Downloads/openbabel-2.3.2/cmake/modules/UsePythonTest.cmake:54:31

  Argument not separated from preceding token by whitespace.
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at test/CMakeLists.txt:171 (include):
  Syntax Warning in cmake code at

    /home/vaibhav/Downloads/openbabel-2.3.2/cmake/modules/UsePythonTest.cmake:57:25

  Argument not separated from preceding token by whitespace.
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at test/CMakeLists.txt:171 (include):
  Syntax Warning in cmake code at

    /home/vaibhav/Downloads/openbabel-2.3.2/cmake/modules/UsePythonTest.cmake:57:39

  Argument not separated from preceding token by whitespace.
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Found PythonInterp: /usr/bin/python (found version "2.6.6") 
-- Configuring done
-- Generating done
-- Build files have been written to: /home/vaibhav/Downloads/build
[root@localhost build]# make
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-- Installing: /usr/local/include/openbabel-2.0/openbabel/inchiformat.h
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-- Installing: /usr/local/include/openbabel-2.0/openbabel/molchrg.h
-- Installing: /usr/local/include/openbabel-2.0/openbabel/math/align.h
-- Installing: /usr/local/include/openbabel-2.0/openbabel/math/matrix3x3.h
-- Installing: /usr/local/include/openbabel-2.0/openbabel/math/transform3d.h
-- Installing: /usr/local/include/openbabel-2.0/openbabel/math/erf.h
-- Installing: /usr/local/include/openbabel-2.0/openbabel/math/vector3.h
-- Installing: /usr/local/include/openbabel-2.0/openbabel/math/spacegroup.h
-- Installing: /usr/local/include/openbabel-2.0/openbabel/stereo/tetrahedral.h
-- Installing: /usr/local/include/openbabel-2.0/openbabel/stereo/tetraplanar.h
-- Installing: /usr/local/include/openbabel-2.0/openbabel/stereo/stereo.h
-- Installing: /usr/local/include/openbabel-2.0/openbabel/stereo/bindings.h
-- Installing: /usr/local/include/openbabel-2.0/openbabel/stereo/cistrans.h
-- Installing: /usr/local/include/openbabel-2.0/openbabel/stereo/squareplanar.h
-- Installing: /usr/local/include/openbabel-2.0/openbabel/stereo/tetranonplanar.h
-- Installing: /usr/local/share/openbabel/2.3.2/aromatic.txt
-- Installing: /usr/local/share/openbabel/2.3.2/atomtyp.txt
-- Installing: /usr/local/share/openbabel/2.3.2/babel_povray3.inc
-- Installing: /usr/local/share/openbabel/2.3.2/bondtyp.txt
-- Installing: /usr/local/share/openbabel/2.3.2/element.txt
-- Installing: /usr/local/share/openbabel/2.3.2/fragments.txt
-- Installing: /usr/local/share/openbabel/2.3.2/gaff.dat
-- Installing: /usr/local/share/openbabel/2.3.2/gaff.prm
-- Installing: /usr/local/share/openbabel/2.3.2/ghemical.prm
-- Installing: /usr/local/share/openbabel/2.3.2/isotope-small.txt
-- Installing: /usr/local/share/openbabel/2.3.2/isotope.txt
-- Installing: /usr/local/share/openbabel/2.3.2/logp.txt
-- Installing: /usr/local/share/openbabel/2.3.2/MACCS.txt
-- Installing: /usr/local/share/openbabel/2.3.2/mmff94.ff
-- Installing: /usr/local/share/openbabel/2.3.2/mmff94s.ff
-- Installing: /usr/local/share/openbabel/2.3.2/mmffang.par
-- Installing: /usr/local/share/openbabel/2.3.2/mmffbndk.par
-- Installing: /usr/local/share/openbabel/2.3.2/mmffbond.par
-- Installing: /usr/local/share/openbabel/2.3.2/mmffchg.par
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-- Installing: /usr/local/share/openbabel/2.3.2/mmffs_tor.par
-- Installing: /usr/local/share/openbabel/2.3.2/mr.txt
-- Installing: /usr/local/share/openbabel/2.3.2/patterns.txt
-- Installing: /usr/local/share/openbabel/2.3.2/phmodel.txt
-- Installing: /usr/local/share/openbabel/2.3.2/plugindefines.txt
-- Installing: /usr/local/share/openbabel/2.3.2/psa.txt
-- Installing: /usr/local/share/openbabel/2.3.2/qeq.txt
-- Installing: /usr/local/share/openbabel/2.3.2/resdata.txt
-- Installing: /usr/local/share/openbabel/2.3.2/ringtyp.txt
-- Installing: /usr/local/share/openbabel/2.3.2/SMARTS_InteLigand.txt
-- Installing: /usr/local/share/openbabel/2.3.2/space-groups.txt
-- Installing: /usr/local/share/openbabel/2.3.2/superatom.txt
-- Installing: /usr/local/share/openbabel/2.3.2/svgformat.script
-- Installing: /usr/local/share/openbabel/2.3.2/torlib.txt
-- Installing: /usr/local/share/openbabel/2.3.2/types.txt
-- Installing: /usr/local/share/openbabel/2.3.2/UFF.prm
-- Installing: /usr/local/share/man/man1/obspectrophore.1
-- Installing: /usr/local/share/man/man1/obconformer.1
-- Installing: /usr/local/share/man/man1/obfit.1
-- Installing: /usr/local/share/man/man1/obrotate.1
-- Installing: /usr/local/share/man/man1/obminimize.1
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-- Installing: /usr/local/share/man/man1/roundtrip.1
-- Installing: /usr/local/share/man/man1/obgen.1
-- Installing: /usr/local/share/man/man1/obabel.1
-- Installing: /usr/local/share/man/man1/obprobe.1
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-- Installing: /usr/local/share/man/man1/obrotamer.1
-- Installing: /usr/local/share/man/man1/obgrep.1
-- Installing: /usr/local/share/man/man1/obchiral.1
-- Installing: /usr/local/share/man/man1/obenergy.1
-- Installing: /usr/local/share/man/man1/babel.1
-- Installing: /usr/local/share/openbabel/2.3.2/splash.png
-- Installing: /usr/local/lib/libopenbabel.so.4.0.2
-- Installing: /usr/local/lib/libopenbabel.so.4
-- Installing: /usr/local/lib/libopenbabel.so
-- Set runtime path of "/usr/local/lib/libopenbabel.so.4.0.2" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/plugin_descriptors.so
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-- Installing: /usr/local/lib/openbabel/2.3.2/plugin_fingerprints.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/plugin_fingerprints.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/plugin_forcefields.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/plugin_forcefields.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/plugin_ops.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/plugin_ops.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/plugin_charges.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/plugin_charges.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/smilesformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/smilesformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/mdlformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/mdlformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/mol2format.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/mol2format.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/pdbformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/pdbformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/inchiformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/inchiformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/asciiformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/asciiformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/copyformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/copyformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/MNAformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/MNAformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/molreport.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/molreport.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/nulformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/nulformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/povrayformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/povrayformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/reportformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/reportformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/svgformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/svgformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/textformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/textformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/titleformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/titleformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/pngformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/pngformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/acesformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/acesformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/abinitformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/abinitformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/adfformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/adfformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/castepformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/castepformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/crystal09format.so
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-- Installing: /usr/local/lib/openbabel/2.3.2/dmolformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/dmolformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/fchkformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/fchkformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/fhiaimsformat.so
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-- Installing: /usr/local/lib/openbabel/2.3.2/gamessformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/gamessformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/gaussformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/gaussformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/gausscubeformat.so
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-- Installing: /usr/local/lib/openbabel/2.3.2/gausszmatformat.so
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-- Installing: /usr/local/lib/openbabel/2.3.2/gulpformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/gulpformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/hinformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/hinformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/jaguarformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/jaguarformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/molproformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/molproformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/mopacformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/mopacformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/nwchemformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/nwchemformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/pwscfformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/pwscfformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/qchemformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/qchemformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/turbomoleformat.so
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-- Installing: /usr/local/lib/openbabel/2.3.2/vaspformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/vaspformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/xsfformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/xsfformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/zindoformat.so
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-- Installing: /usr/local/lib/openbabel/2.3.2/gamessukformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/gamessukformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/APIInterface.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/APIInterface.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/CSRformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/CSRformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/PQSformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/PQSformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/MCDLformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/MCDLformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/alchemyformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/alchemyformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/acrformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/acrformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/amberformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/amberformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/balstformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/balstformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/bgfformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/bgfformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/boxformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/boxformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/cacaoformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/cacaoformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/cacheformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/cacheformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/carformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/carformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/cccformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/cccformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/chem3dformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/chem3dformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/chemdrawct.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/chemdrawct.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/chemtoolformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/chemtoolformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/cifformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/cifformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/crkformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/crkformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/cssrformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/cssrformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/dlpolyformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/dlpolyformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/fastsearchformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/fastsearchformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/fastaformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/fastaformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/featformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/featformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/fhformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/fhformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/fingerprintformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/fingerprintformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/fpsformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/fpsformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/freefracformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/freefracformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/ghemicalformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/ghemicalformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/gromos96format.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/gromos96format.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/groformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/groformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/lmpdatformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/lmpdatformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/mmcifformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/mmcifformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/mmodformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/mmodformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/moldenformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/moldenformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/mpdformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/mpdformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/mpqcformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/mpqcformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/msiformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/msiformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/msmsformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/msmsformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/opendxformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/opendxformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/outformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/outformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/pcmodelformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/pcmodelformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/pdbqtformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/pdbqtformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/posformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/posformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/pqrformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/pqrformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/shelxformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/shelxformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/thermoformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/thermoformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/tinkerformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/tinkerformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/unichemformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/unichemformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/viewmolformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/viewmolformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/xedformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/xedformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/xyzformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/xyzformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/yasaraformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/yasaraformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/rxnformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/rxnformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/chemdrawcdx.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/chemdrawcdx.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/chemkinformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/chemkinformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/rsmiformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/rsmiformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/xtcformat.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/xtcformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/2.3.2/png2format.so
-- Set runtime path of "/usr/local/lib/openbabel/2.3.2/png2format.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/libinchi.so.0.4.1
-- Installing: /usr/local/lib/libinchi.so.0
-- Installing: /usr/local/lib/libinchi.so
-- Set runtime path of "/usr/local/lib/libinchi.so.0.4.1" to "/usr/local/lib"
-- Installing: /usr/local/bin/babel
-- Set runtime path of "/usr/local/bin/babel" to "/usr/local/lib"
-- Installing: /usr/local/bin/obabel
-- Set runtime path of "/usr/local/bin/obabel" to "/usr/local/lib"
-- Installing: /usr/local/bin/obchiral
-- Set runtime path of "/usr/local/bin/obchiral" to "/usr/local/lib"
-- Installing: /usr/local/bin/obconformer
-- Set runtime path of "/usr/local/bin/obconformer" to "/usr/local/lib"
-- Installing: /usr/local/bin/obenergy
-- Set runtime path of "/usr/local/bin/obenergy" to "/usr/local/lib"
-- Installing: /usr/local/bin/obfit
-- Set runtime path of "/usr/local/bin/obfit" to "/usr/local/lib"
-- Installing: /usr/local/bin/obgen
-- Set runtime path of "/usr/local/bin/obgen" to "/usr/local/lib"
-- Installing: /usr/local/bin/obminimize
-- Set runtime path of "/usr/local/bin/obminimize" to "/usr/local/lib"
-- Installing: /usr/local/bin/obprobe
-- Set runtime path of "/usr/local/bin/obprobe" to "/usr/local/lib"
-- Installing: /usr/local/bin/obprop
-- Set runtime path of "/usr/local/bin/obprop" to "/usr/local/lib"
-- Installing: /usr/local/bin/obrotamer
-- Set runtime path of "/usr/local/bin/obrotamer" to "/usr/local/lib"
-- Installing: /usr/local/bin/obrotate
-- Set runtime path of "/usr/local/bin/obrotate" to "/usr/local/lib"
-- Installing: /usr/local/bin/obspectrophore
-- Set runtime path of "/usr/local/bin/obspectrophore" to "/usr/local/lib"
-- Installing: /usr/local/bin/obgrep
-- Set runtime path of "/usr/local/bin/obgrep" to "/usr/local/lib"
-- Installing: /usr/local/bin/roundtrip
-- Set runtime path of "/usr/local/bin/roundtrip" to "/usr/local/lib"
[root@localhost build]# 

--
With Regards.

Dr. Vaibhav A. Dixit, (M.S. and Ph.D.: NIPER, Postdoc: AstraZeneca, UK and IISc, Bangalore)
Associate Professor,
Department of Pharmaceutical Chemistry,
School of Pharmacy & Technology Management,
SVKM's NMIMS, 
Mukesh Patel Technology Park
Babulde, Bank of Tapi River,
Mumbai-Agra Road,
Shirpur, Dist. Dhule -425405
India.
Email: [hidden email]
www.nmims.edu
+91-7709129400.
http://scholar.google.co.in/citations?user=X876BKcAAAAJ&hl=en&oi=sra

Please consider the environment before printing this e-mail

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Re: unable to run babel command after installation centOS 6

Pascal Muller-3
Hi Vaibhav,



I have followed the procedure for installation given below.
In short I could not find major errors during the process expect for the fact that:
1) It could not find LibXml2, wxWidgets
2) -- Performing Test SCANDIR_NEEDS_CONST - Failed
3) -- Looking for conio.h - not found
4) -- Looking for rint - not found
5) -- Looking for sranddev - not found
6) Syntax Warning in cmake code at (in two places)

Thus I am not sure if installation was a success or not?
May be not because I am unable to use the babel command.

At first glance, I see no fatal error in your output.
Could you please paste your babel command and its output too?

Regards,
Pascal


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Re: unable to run babel command after installation centOS 6

Vaibhav Dixit
Hi Pascal and all,
I have given the following response to suggestions by Fredrik and others.
I think there is a delay in my responses getting accepted and viewed by members of the group.
Not sure why, this should happen?
thanks for your suggestions.
Vaibhav​​


Hi Fredrik and all,
What I meant is that it showed "bash: babel: command not found"
But when I installed not as root then its working.
Can you please suggest me on the following also?
I want to get the last optimized geom from GAMESS output, but when I use the following command 
babel -igamin xyz.out -ogamin xyz-1.inp

I get the first geometry not the last optimized one.
babel -H doesn't say anything on that.
Any suggestion is highly appreciated.
thank you

On Mon, Apr 25, 2016 at 1:21 PM, Pascal Muller <[hidden email]> wrote:
Hi Vaibhav,



I have followed the procedure for installation given below.
In short I could not find major errors during the process expect for the fact that:
1) It could not find LibXml2, wxWidgets
2) -- Performing Test SCANDIR_NEEDS_CONST - Failed
3) -- Looking for conio.h - not found
4) -- Looking for rint - not found
5) -- Looking for sranddev - not found
6) Syntax Warning in cmake code at (in two places)

Thus I am not sure if installation was a success or not?
May be not because I am unable to use the babel command.

At first glance, I see no fatal error in your output.
Could you please paste your babel command and its output too?

Regards,
Pascal




--
With Regards.

Dr. Vaibhav A. Dixit, (M.S. and Ph.D.: NIPER, Postdoc: AstraZeneca, UK and IISc, Bangalore)
Associate Professor,
Department of Pharmaceutical Chemistry,
School of Pharmacy & Technology Management,
SVKM's NMIMS, 
Mukesh Patel Technology Park
Babulde, Bank of Tapi River,
Mumbai-Agra Road,
Shirpur, Dist. Dhule -425405
India.
Email: [hidden email]
www.nmims.edu
+91-7709129400.
http://scholar.google.co.in/citations?user=X876BKcAAAAJ&hl=en&oi=sra

Please consider the environment before printing this e-mail

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your business applications. It resolves application problems quickly and
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Re: unable to run babel command after installation centOS 6

Geoff Hutchison
> I think there is a delay in my responses getting accepted and viewed by members of the group.

If you are not a member of the mailing list or are sending an e-mail from a different e-mail address, your message will have to be moderated.

-Geoff
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Re: unable to run babel command after installation centOS 6

Vaibhav Dixit
I became a member, but after I had posted the first question.
Will that cause this delay?
thanks
vaibhav

On Mon, Apr 25, 2016 at 9:55 PM, Geoffrey Hutchison <[hidden email]> wrote:
> I think there is a delay in my responses getting accepted and viewed by members of the group.

If you are not a member of the mailing list or are sending an e-mail from a different e-mail address, your message will have to be moderated.

-Geoff



--
With Regards.

Dr. Vaibhav A. Dixit, (M.S. and Ph.D.: NIPER, Postdoc: AstraZeneca, UK and IISc, Bangalore)
Associate Professor,
Department of Pharmaceutical Chemistry,
School of Pharmacy & Technology Management,
SVKM's NMIMS, 
Mukesh Patel Technology Park
Babulde, Bank of Tapi River,
Mumbai-Agra Road,
Shirpur, Dist. Dhule -425405
India.
Email: [hidden email]
www.nmims.edu
+91-7709129400.
http://scholar.google.co.in/citations?user=X876BKcAAAAJ&hl=en&oi=sra

Please consider the environment before printing this e-mail

------------------------------------------------------------------------------
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Applications Manager provides deep performance insights into multiple tiers of
your business applications. It resolves application problems quickly and
reduces your MTTR. Get your free trial!
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